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Workflow example for the Tasmanian thylacine1 years ago
Setup | Workflow | Step 1: Build the population model for the study region | Tasmanian study region | IBRA bioregions | Density dependence function | Harvest function | Template model | Step 2: Build generators for dynamically generating model parameters | Initial habitat suitability | Habitat decline | Initial abundance and carrying capacity generator | Stage matrix generator | Dispersal generator | Example model run | Step 3: Sample model and generator parameters for each simulation | Step 4: Build a simulation manager to run each simulation | Step 5: Build a results manager to generate summary results (metrics) | Using the PopulationResults class | Generating summary metrics and matrices | Summary metric refinement | Step 6: Build a validator to select a model ensemble | Selected model ensemble | Model ensemble summary metrics | Model ensemble parameters | Model ensemble stochasticity | Model ensemble verification | Model ensemble usage | Summary | References
Population introduction via translocation functions1 years ago
Setup | Step 1: Build the population model for the study region | Study region | Land-use modifier | Environmental correlation | Spatially-varying growth rates | Step 2: Setup the translocation function | Introduction sites and times | Translocation function | Step 3: Build generators for dynamically generating model parameters | Growth rate generator | Dispersal generator | Capacity generator | Step 4: Build a template model | Step 5: Run multiple simulations | Define the latin-hypercube for sampling | Step 6: Extract results from simulations | Extract results
Simple workflow example for a population model2 years ago
Setup | Workflow | Step 1: Build the population model for the study region | Study region | Environmental correlation | Harvest function | Template model | Step 2: Build generators for dynamically generating model parameters | Habitat suitability | Initial abundance and carrying capacity generator | Dispersal generator | Step 3: Sample model and generator parameters for each simulation | Step 4: Build a simulation manager to run each simulation | Step 5: Build a results manager to generate summary results (metrics) | Step 6: Build a validator to select a model ensemble | Summary | References
Workflow example for the steppe bison4 years ago
Setup | Table of Contents | 1. Create a PaleoRegion | 2. Generate dispersal and carrying capacity | 2.a. Generate dispersal matrix | 2.b. Generate carrying capacity landscape | 3. Create the model template | 4. Sample model and generator parameters for each simulation | 5. Run the simulations | 6. Examine the results
Estimating Autocorrelation of Colored Noise6 years ago
What is colored noise? | Example: Bias and precision of autocorrelation estimates | Example: Estimating autocorrelation in colored noise populations | Correcting the bias