Package: colorednoise 1.1.2

colorednoise: Simulate Temporally Autocorrelated Populations

Temporally autocorrelated populations are correlated in their vital rates (growth, death, etc.) from year to year. It is very common for populations, whether they be bacteria, plants, or humans, to be temporally autocorrelated. This poses a challenge for stochastic population modeling, because a temporally correlated population will behave differently from an uncorrelated one. This package provides tools for simulating populations with white noise (no temporal autocorrelation), red noise (positive temporal autocorrelation), and blue noise (negative temporal autocorrelation). The algebraic formulation for autocorrelated noise comes from Ruokolainen et al. (2009) <doi:10.1016/j.tree.2009.04.009>. Models for unstructured populations and for structured populations (matrix models) are available.

Authors:July Pilowsky [aut, cre]

colorednoise_1.1.2.tar.gz
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colorednoise.pdf |colorednoise.html
colorednoise/json (API)
NEWS

# Install 'colorednoise' in R:
install.packages('colorednoise', repos = c('https://japilo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/japilo/colorednoise/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

9 exports 10 stars 2.11 score 10 dependencies 1 dependents 1 mentions 18 scripts 385 downloads

Last updated 5 months agofrom:29ce2cbac3. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 08 2024
R-4.5-win-x86_64OKSep 08 2024
R-4.5-linux-x86_64OKSep 08 2024
R-4.4-win-x86_64OKSep 08 2024
R-4.4-mac-x86_64OKSep 08 2024
R-4.4-mac-aarch64OKSep 08 2024
R-4.3-win-x86_64OKSep 08 2024
R-4.3-mac-x86_64OKSep 08 2024
R-4.3-mac-aarch64OKSep 08 2024

Exports:autocorr_simautocorrelationcolored_multi_rnormcolored_noisecor2covmatrix_modelmulti_rnormstdev_transformunstructured_pop

Dependencies:clidata.tablegluelifecyclemagrittrpurrrRcppRcppArmadillorlangvctrs

Estimating Autocorrelation of Colored Noise

Rendered fromnoise.Rmdusingknitr::rmarkdownon Sep 08 2024.

Last update: 2020-08-04
Started: 2017-09-24